Lectures

Interpreting Gene Lists from -omics Studies

Location: Downtown Toronto, ON
Date: July 9-10, 2009

• Interpreting Gene Lists from -omics Studies July 2009 - Module 1

  Module 1: Introduction to gene lists (Chair: Gary Bader)

  PDF | PPT | MP4 (VIDEO)
• Interpreting Gene Lists from -omics Studies July 2009 - Module 2

  Module 2: Finding over-represented gene functions in gene lists (Chair: Quaid Morris)

  PDF | PPT | MP4 (VIDEO)
• Interpreting Gene Lists from -omics Studies July 2009 - Module 3

  Module 3: Predicting transcriptional regulation from gene lists (Chair: Wyeth Wasserman)

  PDF | PPT | MP4 (VIDEO)
• Interpreting Gene Lists from -omics Studies July 2009 - Module 4

  Module 4: Pathway and network analysis of gene lists (Chair: Gary Bader)

  PDF | PPT | MP4 (VIDEO)

Clinical Biomarkers

Location: Toronto, ON
Date: July 16-17, 2009

• Clinical Biomarkers July 2009 - Module 1

  Module 1: Introduction to biomarkers (Faculty: Sohrab Shah & Anna Lapuk)

  PDF | PPT | MP4 (VIDEO)
• Clinical Biomarkers July 2009 - Module 2

  Module 2: Identifying candidate biomarkers from a high-dimensional data set (Faculty: Shah & Lapuk)

  PDF | PPT | MP4 (VIDEO)
• Clinical Biomarkers July 2009 - Module 3

  Module 3: Introduction to clinical variables and ‘personalized medicine’ (Faculty: Shah & Lapuk)

  PDF | PPT | MP4 (VIDEO)
• Clinical Biomarkers July 2009 - Module 4

  Module 4: Lab - Reproducing published data: Integrating clinical and genomic data

  PDF | PPT | MP4 (VIDEO)

Informatics on High Throughput Sequencing

Location: Downtown Toronto, ON
Date: July 23-24, 2009

• Informatics on High Throughput Sequencing Jul-2009 - Module 1

  Module 1: Introduction to next generation sequencing (Faculty: Francis Ouellette)

  PDF | PPT | MP4 (VIDEO)
• Informatics on High Throughput Sequencing Jul-2009 - Module 2

  Module 2: Genome assembly (Faculty: Michael Brudno)

  PDF | PPT | MP4 (VIDEO)
• Informatics on High Throughput Sequencing Jul-2009 - Module 3

  Module 3: Large Scale Genome Variation (Faculty: Michael Brudno)

  PDF | PPT | MP4 (VIDEO)
• Informatics on High Throughput Sequencing Jul-2009 - Module 4

  Module 4: Whole Transcriptome & RNA-Sequencing (Faculty: Michael Stromberg)

  PDF | PPT | MP4 (VIDEO)
• Informatics on High Throughput Sequencing Jul-2009 - Module 5

  Module 5: Genome variation - SNPs (Faculty: Michael Stromberg)

  PDF | PPT | MP4 (VIDEO)
• Informatics on High Throughput Sequencing Jul-2009 - Module 6

  Module 6: Data management (Faculty: Asim Siddiqui)

  PDF | PPT | MP4 (VIDEO)
  
  
  
  
  
  

  Interpreting Gene Lists from OMICS Studies ( Click PDF / PPT )

  Location: Toronto, ON
  Date: June 6-7, 2008

  Module 1: Introduction to gene lists (Chair: Gary Bader) PDF | PPT
  Module 2: Finding over-represented gene functions in gene lists (Chair: Quaid Morris) PDF | PPT
  Module 3: Predicting transcriptional regulation from gene lists (Chair: Wyeth Wasserman) PDF | PPT
  Module 4: Pathway and network analysis of gene lists (Chair: Gary Bader) PDF | PPT
  Module 5: Future PDF | PPT

  Systems & Network Biology

  Location: Toronto, ON
  Date: June 27-28, 2008

  Module 1: Introduction to systems biology (Lecturer: Charlie Boone) PDF | PPT
  Module 2: PDF | PPT
  Module 3: Modelling with ordinary differential equations (Lecturer: Brian Ingalls) PDF | PPT
  Module 4: Metabolic modelling (Lecturer: Radhakrishnan Mahadevan) PDF | PPT
  Module 4 Lab: (Radhakrishnan Mahadevan) PDF | PPT
  Module 5: Stochastic modelling and simulation (Lecturer: David McMillen) PDF | PPT
  Module 5 Lab: (David McMillen) PDF | PPT
  Module 6: Interaction networks and pathways (Lecturer: Igor Jurisica) PDF | PPT
  Module 7: Databases and multiscale visualization (Lecturer: Zhenjun Hu) PDF | PPT

  Informatics on High Throughput Sequencing Data

  Location: Toronto, ON
  Date: July 25-26, 2008

  Module 1: Introduction to next gen sequencing (Lecturer: Francis Ouellette) PDF | PPT
  Module 2: De novo Genome assembly (Lecturer: Michael Brudno) PDF | PPT
  Module 2 Lab: (Lead: Michael Brudno & Asim Siddiqui) PDF | PPT
  Module 3: Transcriptome/Chip-Seq (Lecturer: Asim Siddiqui) PDF | PPT
  Module 3 Lab: (Lead: Michael Brudno & Asim Siddiqui) PDF | PPT
  Module 4: Data management (Lecturer: Asim Siddiqui) PDF | PPT
  Module 5: Genome Variation (Lecturer: Michael Stromberg) PDF | PPT
  Module 5 Lab: (Lead: Michael Stromberg) PDF | PPT

  Essential Statistics in Biology: Getting the Numbers Right

  Location: Toronto, ON
  Date: October 3-4, 2008

  Module 1: Exploratory data analysis and common statistical assumptions in biology (Chair: Raphael Gottardo) PDF | PPT
  Module 2: Hypothesis testing (Chair: Raphael Gottardo) PDF | PPT
  Module 3: Multivariate analysis (Chair: Raphael Gottardo) PDF | PPT
  Module 4: Bayesian vs. Frequentist (Chair: Raphael Gottardo) PDF | PPT
  Module 5: Linear Regression Modeling Strategies (Chair: Laurent Briollais) PDF | PPT
  Module 6: Binary logistic regression (Chair: Laurent Briollais) PDF | PPT
  Module 7: Survival analysis models (Chair: Laurent Briollais) PDF | PPT
  Module 8: Statistics for Genome-wide Association Studies (Chair: Laurent Briollais) PDF | PPT

Lectures