Developing the Tools | BIOINFORMATICS

Developing the Tools

Lecture	Speaker	Download
1.0 Course Introduction	John J. Salama
1.1 Introduction to J2EE Development	John J. Salama
1.2 Eclipse, CVS, Tomcat, and Ant	Stephen Montgomery
1.3 Development Environment Basics	Dominik Gehl
2.0 Data Modeling I: XML & XSLT	Marc Dumontier
2.2 XML Schema & JAXB	Marc Dumontier
2.2 Microarray Data Modeling Lab	Sebastien Lemieux
2.3 Auto-generating Java classes using JAXB	Marc Dumontier
3.0 Biopackages I - sequence manipulation with BioJava	Sohrab Shah
3.1 MySQL and JDBC “Lets talk databases”	Sohrab Shah
3.2 MySQL Database Lab	Dominik Gehl
3.3 The NCBI C++ Toolkit	Doron Betel
4.0 Data Mining	Sebastien Lemieux
4.1 From Database to Data mining	Sohrab Shah
4.2 Algorithms	Sebastien Lemieux
5.0.1 Thread Safe Web Applications	John J. Salama
5.0 Java Servlets & Java Server Pages	François Major
5.1 Developing Servlets & JSPs	John J. Salama
5.2 Transforming Data: Using Apache Xalan to apply XSLT transformations	Marc Dumontier
6.0 Other Bioinformatics Tools	Howard Feldman

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