Bioinformatics - Species Specific Databases

Human

OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge base GDB - Genome Data Base GeneCards - Db integrating information on human genes The Genome Channel This system is a prototype graphical browser for querying the annotated reference genome. UDB - Unified db for Human genome mapping Ensembl Human genome browser UCSC human genome working draft TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) Allgenes.org - Human predicted gene index/catalog GenLink - Human genetics resource GeneLynx - Portal to the human genome GENOTK - Human cDNA db HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...) HUNT - Human Novel Transcripts CGAP - Cancer Genome Anatomy Project MGC - Mammalian Gene Collection SCDb - Stem cell db Homophila - Human Disease to Drosophila gene db Chromosomes Chr1 at Rutgers - Human chromosome 1 at Rutgers Chr1 at Sanger - Sanger Center chromosome 1 project Chr1 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 1 Chr2 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 2 Chr3 - Human chromosome 3 db at the University of Texas Health Science Center Chr3 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 3 Chr4 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 4 Chr5 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 5 Chr6 at Sanger - Sanger Center chromosome 6 project Chr6 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 6 Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children Chr7 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 7 Chr8 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 8 Chr9 at Sanger - Sanger Center chromosome 1 project Chr9 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 9 Chr9 - Human chromosome 9 db Chr10 at Sanger - Sanger Center chromosome 10 project Chr10 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 10 11DB - Human chromosome 11 db at Imperial College (U.K.) Chr11 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 11 Chr12 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 12 Chr13 at Sanger - Sanger Center chromosome 13 project Chr13 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 13 Chr14 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 14 Chr15 UBC - Human chromosome 15 WWW page at UBC Chr15 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 15 Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory Chr16 TIGR - Human chromosome 16 db at TIGR Chr16 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 16 Chr17 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 17 Chr18 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston Children's Hospital Chr19 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 19 Chr20 at Sanger - Sanger Center chromosome 20 project Chr20 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 20 Chr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan) Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute Chr21 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 21 Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 Chr22 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 22 ChrX at Sanger - Sanger Center chromosome 1 project IXDB - Integrated X chromosome db ChrX Swiss-Prot list - Links to Swiss-Prot entries from human chromosome X ChrY Swiss-Prot list - Links to Swiss-Prot entries from human chromosome Y

Human mutation resources/databases

HGMD - Human Gene Mutation db SVD - EBI Sequence variation db HGBASE - Human Genic Bi-Allelic Sequences db GeneDis - Human genetic disease db The SNP consortium dbSNP - Human single nucleotide polymorphism (SNP) db ALFRED - Allele Frequency Db SeattleSNPs - UW-FHCRC Variation Discovery Resource PicSNP - Catalog of non-synonymous SNP List of mutation databases from OMIM List of mutation databases from IMT (Finland) ADAbase - Human adenosine deaminase (ADA) mutation db ADB - Albinism db (Mutations in human genes causing albinism) Albumin Web site Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II) APC mutation AR mutations - Human androgen receptor mutation db Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies BLMbase - Human BLM mutation db (Bloom syndrome) BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) CD3Ebase - Human CD3E mutation db CD3Gbase - Human CD3G mutation db CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collagen mutation db Connexin-deafness - Human connexins mutation db CFTR mutation - Human cystic fibrosis mutation db (CFTR) EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy) KMeyeDB - Eye disease genes db FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db (Haemophilia A) HAeMB - Human Factor IX mutation db (Haemophilia B) FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome) G6PD - Human G6PD deficiency resource G6PDdb - Human G6PD mutation db Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia) GNAS1 - Human GNAS1 mutation db GM2 gangliosidoses - Human Hexosaminidase A (HEXA), B (HEXB) and GM2A mutation db (Tay-Sachs/Sandhoff diseases) HbVar - Hemoglobin variants db Hereditary hearing loss homepage IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID) L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LHR - Human luteinizing hormone (LH) receptor mutation db LQTSdb - Long QT syndrome db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db NF1 - NF1 Genetic Mutation Analysis Consortium web site OCRL1 - OCRL1 mutation db (Lowe Syndrome) OTCase - Human ornithine transcarbamylase (OTCase) website Cytochrome P450 alleles nomenclature p53 mutation db - University of Tokyo p53 mutation db Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX2 mutation - Human PAX2 mutation db PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated protein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases Alsod.org - ALS/SOD1 genetic mutations db TSC - TSC (TSC1/TSC2) variation db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db X-ALD mutation - Human ABCD1 mutation db

Vertebrates

OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia | UK | Japan ] MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia | UK | Japan ] Ensembl Mouse genome browser TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) MGC - Mammalian Gene Collection Mouse gene knockouts db Mouse chromosome 16 at Celera RGD - Rat genome db RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clusters) BovBASE - Bovine genome db (in UK) BOVMAP - Bovine genome db (in France) Ark-Cat - Cat genome db HorseBASE - Horse genome db DGP - Dog Genome Project PiGBASE - Pig genome db SheepBASE - Sheep genome db (also known as SheepMap) MIS - Mendelian Inheritance in Sheep Chickmap - Chicken genome db (ChickBase) Turkey mapping db FishBase - Global information system on fishes Fugu genome project Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes) Ensembl Fugu genome browser Medakafish - Mekada fish (Oryzias latipes) server Ark-Tilapia - Tilapia mossambica genome db The fish net - Zebrafish server Ensembl Zebrafish genome browser

Inveretbrates

WormBase - C.elegans db [Mirror at Sanger ] C.elegans WWW server - at University of Texas Southwestern ACeDb - Caenorhabditis elegans db C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins C.elegans EST - C.elegans EST db from Japan (Yuji Kohara's group) C.elegans Swiss-Prot list - Links to C.elegans Swiss-Prot entries WormPep - C.elegans proteins db WormPD - C.elegans protein db Dictystelium Genome Sequencing project at BCM Dictyostelium discoideum genome project at IENA DictyDb - Dictyostelium discoideum db Dicty_cDB - Dictyostelium discoideum cDNA project Cone shells Web site Parasite genomes db and resources Parasite genomes WWW site PlasmoDB - P.falciparum genome db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger PFDB - Plasmodium falciparum Genome db P.falciparum - Plasmodium falciparum Gene Sequence Tag project MAD - Malaria Antigen db Malaria parasite metabolic pathways Giardia lamblia genome project LGN - Leishmania Genome Network ToxoDB - Toxoplasma gondii genome project Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequence db

Insects

Drosophila Swiss-Prot list - Links to Drosophila Swiss-Prot entries FlyBase - Drosophila genetic and molecular db [Mirror at EBI ] BDGP - Berkeley Drosophila Genome Project FlyView - Drosophila image db GIFTS - Gene Interactions in the Fly Trans-World Server FlyNets - Db of molecular interactions in Drosophila melanogaster Drosophila P450 Web site Homophila - Human Disease to Drosophila gene db Mosquito Genomics AnoDB - Anopheles gambiae db Ensembl Mosquito genome browser

Plants

NAL - AGIS - Access to many plant genome databases at the National Agricultural Library Mendel - Plant gene nomenclature database from CPGN ARS Genome Database Resource (Cornell) ARS Genome Database Resource is primarily a site for communication of Plant Genome data among scientists worldwide. The medium is a set of genome databases, similar to the ones for Human genome mapping and sequencing. They include data about plant genes, chromosome maps, DNA fingerprints, beneficial traits, and crop varieties that possess those traits. Arabidopsis Swiss-Prot list - Links to A.thaliana WWW sites and to Swiss-Prot entries TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR At - TIGR Arabidopsis thaliana db Arabidopsis ABC transporters AMPL - Arabidopsis Membrane Protein Library Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc. Gramene - A comparative mapping resource for grains KOMUGI (Japan) GrainGenes , a genome database for Triticeae and related species. RiceGenes a genome database for rice. RGP - Rice Genome Research Program Oryzabase - Japanese rice genome db RiceGAAS: Rice Genome Annotation Database A rice genome automated annotation system; integrates programs for prediction and analysis of protein-coding gene structure. Rice genome project at Wisconsin Rice-research.org - Monsanto rice genome site TIGR OsGI - TIGR Rice Genome project BeanGenes - Beans genome db BeanRef-Links and references from literature to different aspects of research on beans (Phaseolus and Vigna) - Beans genome db and other resources Chlamydomonas resource center ChlamyDB - Chlamydomonas reinhardtii genome db CottonDB - Cotton genome db MaizeDb - Maize genome db Mendel Bioinformatics Group , UK Mendel-ESTS , contains all of the plant EST and STS sequences currently in dbEST and dbSTS (>94,000) related to the sequences, grouped by gene family, in the Gene Family Database . Mendel-GFDb Database of Genes Organized by Families. Now with Pfam, Prosite & TRANSFAC domain information Mendel-CPGN : developinging a common nomenclature for sequenced plant genes INRA Maize - INRA Maize genome db Plant Chromatin Database Database for chromatin proteins in plants, including functions and molecular phylogenetic relationships, with initial emphasis on Arabidopsis and maize Pisum sativum (pea) web site TIGR Potato - TIGR Potato Functional Genomics project TIGR GmGI - TIGR Soybean Gene Index Snapdragon (A.majus) web site SolGenes -- Genome Database for the Solanaceae A U.S.D.A.-funded Genome Database for the Solanaceae, containing information about potatoes, tomatoes, peppers, and related species. SorghumDB - Sorghum genome db SIU-C Soy Phytoestrogen Gene Mapping SoyBase - Soybean genome db SoyBase metabolic db - Metabolic subset of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db ZmDB Maize Genome Database Goals include discovering maize genes using EST sequencing and engineered Mu (RescueMu) tagging, and developing new tools to facilitate gene mapping and phenotypic analysis.

Fungi

FGSC - Fungal Genetics Stock Center FGR - Fungal Genome Resource Yeast Swiss-Prot list - Links to S.cerevisiae WWW sites and to Swiss-Prot entries CYGD - MIPS Comprehensive Yeast Genome db SGD - Saccharomyces genome db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db YMPL - Yeast Membrane Protein Library PathCalling - Yeast protein-protein interaction db S.pombe Swiss-Prot list - Links to S.pombe WWW sites and to Swiss-Prot entries GeneDB_SPombe - Schizosaccharomyces pombe GeneDB S.pombe genome project S.pombe NIH - S.pombe server at the NIH Forsburg lab pombe pages AGD - Ashbya genome db Aspergillus web site C.albicans Swiss-Prot list - Links to C.albicans WWW sites and to Swiss-Prot entries Candida albicans - Candida albicans server at the Univ. of Minnesota CandidaDB - Candida albicans genome db Neurospora crassa db NGP - Neurospora crassa genome project PC - Pneumocystis carinii genome project Phycomyces Web site - Resource site for scientists working on Phycomyces

Bacteria

WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GeneQuiz HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Institute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ EcoReg - The E.coli regulation consortium B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db [Mirror in Japan ] Micado - Microbial advanced db (B.subtilis + E.coli) BSORF - Japanese server on B.subtilis DBTBS - Db of B.subtilis promoters and transcription factors A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.halodurans - Bacillus halodurans strain C-125 db B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project BGDB - Bordetella genome db B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute BbDB - TIGR Borrelia burgdorferi genome db B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries iBGD - Integrated Buchnera genome db B.cepacia - Burkholderia cepacia genome project C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project Chlamydia - Chlamydia pneumoniae and trachomatis C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db http://www.brgene.lncc.br/indexCV.html C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute C.acetobutylicum - GTC Clostridium acetobutylicum strain ATCC 824 data C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute C.ruminantium - Cowdria ruminantium genome project at Sanger Institute C.hutchinsonii - Cytophaga hutchinsonii genome project DrDB - TIGR Deinococcus radiodurans strain R1 genome db D.hafniense - Desulfitobacterium hafniense genome project E.faecium - Enterococcus faecium genome project F.acidarmanus - Ferroplasma acidarmanus genome project F.tularensis - Francisella tularensis genome WWW site H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries HiDB - Haemophilus influenzae genome db at TIGR H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries HpDB - Helicobacter pylori strain 26695 genome db at TIGR H.pylori J99 - Helicobacter pylori strain J99 genome db at Astra PyloriGene - Helicobacter pylori genomic db L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project ListiList - Listeria monocytogenes and Listeria innocua genome db MC-1 - Magnetococcus MC-1 genome project M.magnetotacticum - Magnetospirillum magnetotacticum genome project MycDB - Mycobacterium db M.bovis - Mycobacterium bovis strain AF2122/97 genome project Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute M.tuberculosis secreted proteins M.tuberculosis structural genomics consortium M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries MgDB - Mycoplasma genitalium genome db at TIGR M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis genome db Mycoplasma synoviae genome db N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project N.punctiforme - Nostoc punctiforme genome project P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project P.aeruginosa db - Pseudomonas aeruginosa genome db P.fluorescens - Pseudomonas fluorescens genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.sphaeroides - Rhodobacter sphaeroides genome project R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries R.prowazekii - Rickettsia prowazekii strain Madrid E genome project S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries S.typhimurium - S.typhimurium genome project RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project S.aromaticivorans - Sphingomonas aromaticivorans genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute S.suis - Streptococcus suis genome project at Sanger Institute S.uberis - Streptococcus uberis genome project at Sanger Institute S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries CyanoBase - Synechocystis PCC 6803 db Synechococcus - Marine synechococcus genome project T.fusca - Thermomonospora fusca genome project TmDB - Thermotoga maritima genome db at TIGR TpDB - Treponema pallidum genome db at TIGR T.erythraeum - Trichodesmium erythraeum genome project T.whipplei - Tropheryma whipplei genome project at Sanger Institute U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - Vibrio cholerae genome db at TIGR Xanthomonas - Xanthomonas genome projects X.fastidiosa - Xylella fastidiosa genome WWW site X.fastidiosa at DOE - DOE Xylella fastidiosa genome project Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute Y.pestis at CNBP - Yersinia pestis genome WWW site

Viruses & Phages

All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db AVIS - Animal Virus Information System Plants Viruses Online - Information on plant viruses Adenoviruses web site HCVDB - Hepatitis C virus db HIV - HIV and related species db HPV - Human papillomaviruses db Influenza sequence db Picornavirus - Picornavirus home page and access to db Tobamoviruses PhageBase Bacteriophage ecology group GOLD - Genomes On-line db DOGS - Database of genome sizes

Archaea

A.pernix - Aeropyrum pernix K1 genome db AfDB - Archaeoglobus fulgidus genome db at TIGR Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries MjDB - Methanococcus jannaschii genome db at TIGR MjFdb - Methanococcus jannaschii functions db M.barkeri - Methanosarcina barkeri genome project Pyrococcus abyssi genome and re-annotation db P.abyssi - Pyrococcus abyssi genome project and db P.furiosus - Pyrococcus furiosus genome project P.horikoshii - Pyrococcus horikoshii OT3 db SGP - Sulfolobus solfataricus strain P2 genome project T.acidophilum - Thermoplasma acidophilum genome project T.volcanium - Thermoplasma volcanium genome project

Mitochondrian & Chloroplast

GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes) MITOMAP - Human mitochondrial genome db MmtDB - Metazoa mitochondrial DNA variants db MitBASE - Integrated mitochondrial DNA db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis HvrBase - Primates mtDNA control region sequences compilation MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db) C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome